专栏名称: 生信宝典
生物信息分析入门、晋级和经验分享。Linux、R、Python学习教程;高通量测序数据分析学习教程;生信软件安装教程。所有内容均为原创分享,致力于从基础学习到提高整个过程。
目录
相关文章推荐
51好读  ›  专栏  ›  生信宝典

Nature | 最新发文速递 (2025.4.3和 2025.4.10)

生信宝典  · 公众号  · 生物  · 2025-04-13 21:00

正文

请到「今天看啥」查看全文


《Nature》隶属于英国自然出版集团,涵盖自然科学全领域,并设有专门的生命科学板块;其强调跨学科融合,生物学内容常与化学、物理等学科交叉。

Nature, Volume 640 Issue 8057, 3 April 2025

Editorial (社论)

Are screens harming teens? What scientists can do to find answers

《屏幕是否危害青少年?科学家如何寻找答案》

A brain drain would impoverish the United States and diminish world science

《人才流失将削弱美国并损害全球科学》

World View (全球视野)

Open source AI isn t truly open here s how researchers can reclaim the term

《“开源” AI 名不副实—科研界如何重新定义这一术语》

Superpowers want to control critical mineral supplies local communities need a stronger say

《大国争夺关键矿产控制权—当地社区需更多话语权》

Research Highlights (研究亮点)

Ancient shackles testify to brutality of Egypt s gold mines

《古埃及金矿的残酷证据:镣铐遗存》

Life-giving oxygen is wafting out of lakes worldwide

《全球湖泊“流失”生命之氧》

A superbug rose to the top after gaining a chemical weapon

《获得化学武器后,超级细菌占据优势》

The best foods for healthy ageing and the worst

《健康长寿的最佳与最差食物》

News in Focus (焦点新闻)

Anxiety is palpable : detention of researchers at US border spurs travel worries

《“焦虑弥漫”:美国边境扣押研究人员引发学术旅行担忧》

Meet qudits : more complex cousins of qubits boost quantum computing

《“量子多维态”( qudits ):量子计算的新助力》

Does sharing first authorship on a paper carry a penalty? What the research says

《论文共同一作是否影响声誉?研究揭示真相》

Pregnancy s true toll on the body: huge birth study paints most detailed picture yet

《怀孕对身体的真实影响:大规模研究揭示最详细图谱》

Exclusive: NIH to cut grants for COVID research, documents reveal

《独家:文件披露 NIH 将削减新冠研究资助》

Paralysed man stands again after receiving reprogrammed stem cells

《瘫痪男子接受“重编程”干细胞后重新站立》

New antibiotic that kills drug-resistant bacteria discovered in technician s garden

《技术人员花园中发现可杀死耐药菌的新型抗生素》

Mathematician who reshaped theory of symmetry wins Abel Prize

《重塑对称性理论的数学家获阿贝尔奖》

Features (专题)

How to get rid of toxic forever chemical pollution

《如何清除有毒“永久化学品”污染》

Do smartphones and social media really harm teens mental health?

《智能手机与社交媒体真的危害青少年心理健康吗?》

Books & Arts (书评与艺术)

Style over substance? What birds mating behaviours reveal about sexual selection

《形式大于内容?鸟类求偶行为揭示性选择奥秘》

Opinion (观点)

Six roadblocks to net zero and how to get around them

《实现净零的六大障碍与破解之道》

The full lethal impact of massive cuts to international food aid

《国际粮食援助大幅削减的致命后果》

Minerals will shape future geopolitical order

《矿产将塑造未来地缘政治格局》

Action needed to mitigate effects of slashing USAID

《需采取行动缓解削减美援署资金的影响》

The global scientific community must keep studying LGBT+ health

《全球科学界应继续研究 LGBT+ 健康问题》

China has already taken steps to reduce retractions of papers from its hospitals

《中国已采取措施减少医院论文撤稿》

Work (职场与工具)

How to know whether a conference is right for you

《如何判断一场会议是否适合你》

Deep dive: How I use robots to survey coral reefs

《深度探索:我用机器人调查珊瑚礁》

Research (研究论文)

News & Views (新闻与观点)

How the Atlantic jet stream has changed in 600 years and what it means for weather

《大西洋急流 600 年变迁及其对天气的影响》

The early origins of bone-tool manufacturing traditions by hominins 1.5 million years ago

150 万年前人类祖先的骨制工具传统起源》

Light wins uphill battle to solve enduring problem in organic synthesis

《光催化破解有机合成难题》

How seahorses and pipefish inspired the design of a boat propeller

《海马与海龙如何启发船用螺旋桨设计》

Genus-wide plant pangenome could inform next-generation crop design

《茄属植物泛基因组助力下一代作物设计》

Designer cannabinoids could be the key to pain relief without adverse effects

《定制大麻素:无副作用的止痛新路径》

Articles (研究论文)

Microsatellite-based real-time quantum key distribution

《基于微卫星的实时量子密钥分发》

Cooper-pair density modulation state in an iron-based superconductor

《铁基超导体中的库珀对密度调制态》

Downscaling micro- and nano-perovskite LEDs

《微型与纳米钙钛矿 LED 的尺寸缩减技术》

Synaptic and neural behaviours in a standard silicon transistor

《标准硅晶体管的突触与神经行为模拟》

Millimetre-scale bioresorbable optoelectronic systems for electrotherapy

《毫米级生物可吸收光电系统用于电疗》

Water structure and electric fields at the interface of oil droplets

《油滴界面水结构与电场特性》

Catalytic allylation of native hexoses and pentoses in water with indium

《铟催化水中天然己糖与戊糖的烯丙基化》

Phosphate-enabled mechanochemical PFAS destruction for fluoride reuse

《磷酸盐机械化学法降解 PFAS 并回收氟化物》

Photoinduced copper-catalysed deracemization of alkyl halides

《光诱导铜催化烷基卤化物的去消旋化》

Solidification of Earth s mantle led inevitably to a basal magma ocean

《地幔凝固必然形成基底岩浆海洋》

Global engineering effects of soil invertebrates on ecosystem functions

《土壤无脊椎动物对生态系统功能的全球工程效应》

Systematic bone tool production at 1.5 million years ago

150 万年前系统性骨制工具生产》

Solanum pan-genetics reveals paralogues as contingencies in crop engineering

《茄属泛基因组揭示基因重复对作物工程的潜在影响》

霍华德·休斯医学研究所,美国纽约冷泉港冷泉港实验室

https://doi.org/10.1038/s41586-025-08619-6

A compendium of human gene functions derived from evolutionary modelling

《基于进化模型的人类基因功能纲要》

Overview of the set of human protein-coding gene functions categorized by high-level GO classes

Global modules robustly emerge from local interactions and smooth gradients

《局部相互作用与平滑梯度驱动全局模块涌现》

Learning produces an orthogonalized state machine in the hippocampus

《学习塑造海马正交化状态机》

Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences

《相同病原序列揭示 SARS-CoV-2 精细传播模式》

美国华盛顿州西雅图,Fred Hutchinson癌症中心疫苗和传染病科,等

Temporal and spatial signature of spread in clusters of identical SARS-CoV-2 sequences

严重急性呼吸系统综合征冠状病毒2型 序列群传播的时空特征

Ancient genomes reveal a deep history of Treponema pallidum in the Americas

《古基因组揭示美洲梅毒螺旋体的悠久历史》

德国莱比锡马克斯·普朗克进化人类学研究所,等

Contextual details of the five individuals who yielded treponemal genomes in this study

本研究中产生梅毒螺旋体基因组的五名个体的背景细节

Circos plot showing genome features of the TPA Nichols reference genome and additional tracks containing metadata specific to the five ancient genomes presented here

Circos图显示了TPA Nichols参考基因组的基因组特征,以及包含此处提出的五个古代基因组特有元数据的其它轨道 (T racks)

基于最大似然的系统发育重建

MC C树。在基于2,104个SNP的非相关宽松时钟模型 (U ncorrelated relaxed clock model)下,使用BEAST 2生成了最大分支可信度 (M aximum clade credibility, MCC)树,这些SNP具有4x读序 (R ead)支持,并在排除推定的重组位置后,删除了数据集中缺失数据超过25%的位置。(树上的)彩色条,表示分 配给每个结点的95%HPD日期区间,颜色表示后验(概率)支持水平。红色虚线表示公元1492年。星号表示古代基因组。

贝叶斯天际线图,显示了梅毒螺旋体随时间的推断有效种群规模 (E ffective population size, Ne)的变化。显示了平均估计值和95%HPD区间。红色虚线表示公元1492年。

易生信单菌基因组课-课件 (溯组理论)

http://www.ehbio.com/Bio_demo_2/fore/#/?pageName=CourseDetails&ID=93

注意:此Nature论文的多数分析、图形,均可通过系统地学习易生信单菌基因组课来完成,抓紧报名!

A systems-level, semi-quantitative landscape of metabolic flux in C. elegans

《线虫代谢流的系统半定量图谱》

Systems-level design principles of metabolic rewiring in an animal

《动物代谢重编程的系统设计原则》

Macrophages protect against sensory axon loss in peripheral neuropathy

《巨噬细胞保护周围神经病变中的感觉轴突》

RUNX2 promotes fibrosis via an alveolar-to-pathological fibroblast transition

RUNX2 通过肺泡成纤维细胞病理转化促进纤维化》

Crypt density and recruited enhancers underlie intestinal tumour initiation

《隐窝密度与招募增强子驱动肠道肿瘤发生》

Endogenous DNA damage at sites of terminated transcripts

《转录终止位点的内源性 DNA 损伤》

De novo design of transmembrane fluorescence-activating proteins

《跨膜荧光激活蛋白的从头设计》

The conserved HIV-1 spacer peptide 2 triggers matrix lattice maturation

HIV-1 保守间隔肽 2 驱动基质晶格成熟》

A cryptic pocket in CB1 drives peripheral and functional selectivity

CB1 受体隐秘口袋驱动外周与功能选择性》

Corrections (更正)

Author Correction: B-cell-specific checkpoint molecules that regulate anti-tumour immunity

《作者更正:调控抗肿瘤免疫的 B 细胞特异性检查点分子》

Author Correction: Endocytosis in the axon initial segment maintains neuronal polarity

《作者更正:轴突起始段内吞作用维持神经元极性》

Author Correction: Observation of an ultra-high-energy cosmic neutrino with KM3NeT

《作者更正: KM3NeT 观测到超高能宇宙中微子》

Focal Point (焦点专题)

Focal Point on Sustainable Electrical Innovations in Japan

《日本可持续电力创新专题》

Nature, Volume 640 Issue 8058, 10 April 2025

Editorial (社论)

Why it’s time the United Nations is led by a woman

《为何现在该由女性领导联合国》

Asilomar conference took courage and foresight — today, inclusivity would also be crucial

《阿西洛马会议需要勇气与远见 如今包容性同样至关重要》

World View (全球视野)

Why more AI researchers should collaborate with governments

《为何更多 AI 研究人员应与政府合作》

‘Now is not the time for despair’ — how scientists can take a stand against political interference

此刻无需绝望 ”— 科学家如何抵抗政治干预》

Research Highlights (研究亮点)

El Niños that linger are becoming less of a rarity

《持续时间长的厄尔尼诺现象不再罕见》

Revealed: where rare and giant starfish hide from an enigmatic killer

《揭秘:稀有巨型海星如何躲避神秘杀手》

Solar cells made of Moon dust could power up a lunar base

《月尘太阳能电池或为月球基地供能》

What if human blood were toxic to mosquitoes? A drug can make it so

《若人类血液对蚊子有毒?药物可使其成真》

News in Focus (焦点新闻)

‘One of the darkest days’: NIH purges agency leadership amid mass lay-offs

最黑暗的日子之一 NIH 在大规模裁员中清除高层》

Can trauma from violence be genetically inherited? Scientists debate Syria refugee study

《暴力创伤会遗传吗?叙利亚难民研究引争议》

Brain implant translates thoughts to speech in an instant

《脑植入设备即时将思维转化为语音》

Deadly Myanmar earthquake was probably a rare rupture, scientists say

《科学家称缅甸致命地震或为罕见断裂事件》

AlphaFold is running out of data — so drug firms are building their own version

AlphaFold 数据告急 药企自研替代工具》

75% of US scientists who answered Nature poll consider leaving

Nature 调查显示 75% 美国科学家考虑离开》

Incredible close-up of colourful crab spiders — March’s best science images

《惊人特写:三月最佳科学影像之多彩蟹蛛》

How Europe aims to woo US scientists and protect academic freedom

《欧洲如何吸引美国科学家并保护学术自由》

Features (专题)

Cells are swapping their mitochondria. What does this mean for our health?

《细胞交换线粒体 这对健康意味着什么?》

Microbial warfare brought us CRISPR. What big breakthroughs could be next?

《微生物战争带来 CRISPR— 下一个重大突破是什么?》

Books & Arts (书评与艺术)

The life aquatic: this board game lets you dip into marine ecology

《水生世界:一款桌游带你探索海洋生态》

Opinion (观点)

Why an overreliance on AI-driven modelling is bad for science

《过度依赖 AI 建模为何有害科学》

Science’s big problem is a loss of influence, not a loss of trust

《科学的困境在于失去影响力,而非信任》

Countries must consider their global footprint when using natural resources

《各国使用自然资源时需考量其全球足迹》

Europe needs to step up on epidemic preparedness

《欧洲需加强流行病防控准备》

The US is against the world on sustainable development

《美国在可持续发展问题上与全球背道而驰》

Europe must grasp chance to become a scientific powerhouse

《欧洲必须把握机会成为科学强国》

Work (职场与工具)

AI for research: the ultimate guide to choosing the right tool

《科研 AI 工具选择终极指南》

Where do proteins go in cells? Next-generation methods map the molecules’ hidden lives

《蛋白质在细胞中的行踪?新技术绘制分子 隐秘生活

Studying seabirds with a cactus as a research assistant

《以仙人掌为 助手 研究军舰鸟的生态学家》

Research (研究论文)

A map of neural signals and circuits traces the logic of brain computation

《神经信号与回路图谱揭示大脑计算逻辑》

Cannabis studies were informing fundamental neuroscience in the 1970s

1970 年代大麻研究推动基础神经科学发展》

Skin wound healing measured remotely through molecular flux

《通过分子流远程监测皮肤伤口愈合》

Mutations that accrue through life set the stage for stomach cancer

《终生积累的突变奠定胃癌发生基础》

Photonic chips provide a processing boost for AI

《光子芯片为 AI 提供算力跃升》

What is the best type of tree to use for forest restoration?

《森林修复应选择何种树木?》

Bird brains help scientists to unveil the secrets of speech

《鸟类大脑助力科学家揭示语言奥秘》

Intersectional analysis for science and technology

《科技领域的交叉性分析》

Acoustic modes in M67 cluster stars trace deepening convective envelopes

M67 星团恒星声学模式揭示对流层深化》

Certified randomness using a trapped-ion quantum processor

《基于囚禁离子量子处理器的认证随机数生成》

Unconventional magnons in collinear magnets dictated by spin space groups

《自旋空间群主导的共线磁体中非常规磁振子》

Fluctuating magnetism and Pomeranchuk effect in multilayer graphene

《多层石墨烯的磁涨落与波梅兰丘克效应》

An integrated large-scale photonic accelerator with ultralow latency

《超低延迟集成式大规模光子加速器》

Universal photonic artificial intelligence acceleration

《通用光子人工智能加速器》

A non-contact wearable device for monitoring epidermal molecular flux

《非接触式可穿戴设备监测表皮分子流》

Deconstruction of rubber via C–H amination and aza-Cope rearrangement

《通过 C–H 胺化与氮杂 - 科普重排分解橡胶》

Formation and composition of Earth’s Hadean protocrust

《地球冥古宙原始地壳的形成与成分》

Widespread slow growth of acquisitive tree species

《高资源获取型树木普遍生长缓慢》

Humans in Africa’s wet tropical forests 150 thousand years ago

15 万年前人类已涉足非洲湿润热带雨林》

Leveraging a phased pangenome for haplotype design of hybrid potato

《利用分阶段泛基因组设计杂交马铃薯单体型》

Lin Cheng ... Sanwen Huang. 热带作物育种国家重点实验室深圳分院,岭南现代农业广东实验室,农业农村部基因组分析实验室,中国农业科学院深圳农业基因组研究所,等

The somatic mutation landscape of normal gastric epithelium

《正常胃上皮体细胞突变图谱》

Convergent vocal representations in parrot and human forebrain motor networks

《鹦鹉与人类前脑运动网络的趋同发声机制》

Functional connectomics spanning multiple areas of mouse visual cortex

《跨越小鼠视皮层多区域的功能连接组学》

Inhibitory specificity from a connectomic census of mouse visual cortex

《小鼠视皮层连接组普查揭示抑制特异性》

Functional connectomics reveals general wiring rule in mouse visual cortex

《功能连接组学揭示小鼠视皮层通用布线规则》

Foundation model of neural activity predicts response to new stimulus types

《神经活动基础模型预测新刺激类型响应》

Perisomatic ultrastructure efficiently classifies cells in mouse cortex

《胞周超微结构高效分类小鼠皮层细胞》

NEURD offers automated proofreading and feature extraction for connectomics

NEURD :连接组学自动校对与特征提取工具》

Connectomics of predicted Sst transcriptomic types in mouse visual cortex

《小鼠视皮层 Sst 转录组预测类型的连接组学》

A small-molecule SARS-CoV-2 inhibitor targeting the membrane protein

《靶向膜蛋白的小分子 SARS-CoV-2 抑制剂》

A coronavirus assembly inhibitor that targets the viral membrane protein

《靶向病毒膜蛋白的冠状病毒组装抑制剂》

Macrophages recycle phagocytosed bacteria to fuel immunometabolic responses

《巨噬细胞回收吞噬细菌以驱动免疫代谢反应》

Cooperative nutrient scavenging is an evolutionary advantage in cancer

《癌症中协同营养清除的进化优势》

Extensive mutual influences of SMC complexes shape 3D genome folding

SMC 复合体广泛互作塑造三维基因组折叠》

Corrections (更正)

Author Correction: Spatially resolved multiomics of human cardiac niches

《作者更正:人类心脏微环境的多组学空间解析》

Author Correction: Heritable polygenic editing: the next frontier in genomic medicine?

《作者更正:可遗传多基因编辑 基因组医学的新前沿?》

Author Correction: AI models collapse when trained on recursively generated data

《作者更正:递归生成数据训练导致 AI 模型崩溃》

Publisher Correction: A metagenomic ‘dark matter’ enzyme catalyses oxidative cellulose conversion

《出版方更正:宏基因组 暗物质 酶催化纤维素氧化转化》

完整PDF列表,请加入易生信QQ群社区,免费下载:

图片
有感兴趣的文章,可在易生信微信群中,发起文章互助


高颜值免费 SCI 在线绘图 ( 点击图片直达 )


最全植物基因组数据库IMP ( 点击图片直达 )

往期精品 ( 点击图片直达文字对应教程 )

机器学习










请到「今天看啥」查看全文