一、线粒体和叶绿体基因组组装
叶绿体基因组组装步骤
线粒体基因组测序策略和方法
线粒体常规分析简介
揭开线粒体基因组的面纱
二、已发表线粒体叶绿体基因组汇总
1. 线粒体基因组数据库：
网址：https://www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi?opt=organelle&taxid=2759
2. 叶绿体基因组数据库
http://rocaplab.ocean.washington.edu/tools/cpbase
网址：https://www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi?opt=plastid&taxid=2759&sort=Genome
三、线粒体叶绿体注释及可视化
1.动物线粒体注释
MITOS: Improved de novo Metazoan Mitochondrial Genome Annotation
网址：http://mitos2.bioinf.uni-leipzig.de/index.py
2.植物线粒体注释
Alverson et al. 2010. Insights into the evolution of mitochondrial genome size
from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).
Mol Biol Evol 27, 1436-1448
网址：http://dogma.ccbb.utexas.edu/mitofy/
3. 植物叶绿体动物线粒体注释
Automatic annotation of organellar genomes with DOGMA. Wyman SK, Jansen RK, Boore JL,Bioinformatics 200420(17):3252-3255
网址：http://dogma.ccbb.utexas.edu/
4. 叶绿体注释及可视化工具
CpGAVAS: Chloroplast Genome Annotation, Visualization, Analysis and GenBank Submission Tool.
网址：http://www.herbalgenomics.org/0506/cpgavas/analyzer/home
5.圈图-GenomeVx
Conant, G. C., and K. H. Wolfe. (2007) GenomeVx: Simple web-based creation of editable circular chromosome maps, Bioinformatics, in press.
网址： http://wolfe.ucd.ie/GenomeVx/
6. 圈图-OrganellarGenomeDRAW
OrganellarGenomeDRAW--a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets.
Lohse, M., Drechsel, O., Kahlau, S. and Bock, R. Nucl. Acids Res. (2013)10.1093/nar/gkt289
网址：http://ogdraw.mpimp-golm.mpg.de/index.shtml
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