一．启动子分析
１．PlantPAN 2.0
The Plant Promoter Analysis Navigator (PlantPAN; http://PlantPAN2.itps.ncku.edu.tw) provides an informative resource for detecting transcription factor binding sites (TFBSs), corresponding TFs, and other important regulatory elements (CpG islands and tandem repeats) in a promoter or a set of promoters in plants. The current PlantPAN release (version 2.0) contains 16,960 TFs and 1,143 matrices of TF binding sites among 76 plant species.
网址：http://plantpan2.itps.ncku.edu.tw/
2.AtPan
AtPAN( A rabidopsis t haliana P romoter A nalysis N et) is a database for transcription regutory networks (TRN) construction in Arabidopsis . AtPAN can detect TFBSs and their corresponding transcription factors (TFs) in a promoter or a set of promoters in Arabidopsis. Additionally, the co-expressed TFs and their target gene from microarray expression data could be retrieved from AtPAN. Furthermore, proteins which interact with the co-expressed TFs can then be found, andco-expressed TRN are reconstructed. On the other hand, the relationships between TFs and their target genes obtained from experiments that reported in literatures are also considered in TRN reconstruction in AtPAN.
网址：http://atpan.itps.ncku.edu.tw/
３．PlantCare
植物启动子
网址：http://bioinformatics.psb.ugent.be/webtools/plantcare/html/
４．EPDnew
is a collection of databases of experimentally validated promoters for selected model organisms. Evidence comes from TSS-mapping from high-throughput expreriments such as CAGE and Oligocapping.
网址：http://epd.vital-it.ch/EPDnew_database.php
５．更多信息参见：
启动子及转录因子结合位点数据库及预测工具
启动子介绍
二.转录因子
１． PlantTFDB 4.0
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. Nucleic Acids Research, 45(D1):D1040-D1045.
网址：http://planttfdb.cbi.pku.edu.cn/index.php
２．更多信息参见：
最新转录因子数据库及软件汇总
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